ó
K™xTc           @   sñ   d  d l  m Z d  d l m Z d  d l m Z d  d l m Z d  d l Z d  d l Z d „  Z	 d „  Z
 d e f d	 „  ƒ  YZ d
 e f d „  ƒ  YZ d e f d „  ƒ  YZ d e j f d „  ƒ  YZ d „  Z d „  Z e d k rí e ƒ  n  d S(   iÿÿÿÿ(   t   division(   t   crystal(   t   sgtbx(   t   rationalNc         C   s0   |  d | d |  d | d |  d | d S(   Ni    i   i   (    (   t   at   b(    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   dot3   s    c         C   s”   g  |  D] } t  j | d ƒ ^ q } xb t d ƒ D]T } x$ | | d k  r^ | | c d 7<q; Wx$ | | d k r… | | c d 8<qb Wq2 Wt | ƒ S(   Ng      ð?i   g        (   t   matht   fmodt   xranget   tuple(   t   x_fract   xt   resultt   i(    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   mod_positive3   s    %  t   plane_fractionalc           B   s#   e  Z d  „  Z d „  Z d „  Z RS(   c         C   s(   | |  _  | |  _ | |  _ | |  _ d  S(   N(   t   st   nt   pt   c(   t   selfR   R   R   R   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   __init__   s    			c         C   s(   t  j |  j j ƒ  j ƒ  |  j j ƒ  ƒ S(   N(   R   t   rt_mxR   t   rt   minus_unit_mxt   t(   R   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt	   operation   s    c   	      C   sT  |  j  ƒ  } | j ƒ  j ƒ  } | j ƒ  j ƒ  } d  d  d  g } x t d ƒ D]q } xh t d ƒ D]Z } | | d | } | | d  k r_ | d k r_ | d k  r¬ d | | <q¹ d | | <q_ q_ WqL Wt t j | | ƒ j ƒ  ƒ } x; t d ƒ D]- } | | d k rì | | d c d 9<qì qì Wt	 t j
 | j ƒ  j t j | | ƒ ƒ | j ƒ  ƒ ƒ S(   Ni   i    iÿÿÿÿi   i   (   R   R   t   numt   dent   NoneR	   t   listR   t   rot_mxt   strR   t   multiplyR   (	   R   t   opR   t   dt   signst   jR   t   rijt   m(    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt	   algebraic   s       (   t   __name__t
   __module__R   R   R)   (    (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR      s   		t   planes_fractionalc           B   s   e  Z d  „  Z RS(   c   	      C   s>  | |  _  i  } g  |  _ xt | j ƒ  ƒ D]} | | ƒ } | j ƒ  j ƒ  } | j ƒ  d k  rg q+ n  | j ƒ  d k  r q+ n  | j ƒ  } | j	 ƒ  j
 ƒ  } | j ƒ  | j ƒ  k s» t ‚ t | | j ƒ  ƒ } | j | | f ƒ s+ d | | | f <|  j j t d | d | d | d t j | | j ƒ  ƒ ƒ ƒ q+ q+ Wd  S(   Ni   i    R   R   R   R   (   t   space_groupR   R	   t   order_pR   t   infot   typet   senset   evR   t   mod_positiveR   t   t_dent   AssertionErrorR   R   t   has_keyt   appendR   R   t   int(	   R   R-   t   nc_dictt   i_smxR   t   r_infoR   R   R   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR   1   s$    		  	(   R*   R+   R   (    (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR,   /   s   t   plane_cartesianc           B   s   e  Z d  „  Z d „  Z RS(   c         C   s   | |  _  | |  _ d  S(   N(   R   R   (   R   R   R   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR   E   s    	c         C   s   t  t |  j | ƒ |  j ƒ S(   N(   t   absR   R   R   (   R   R   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   distanceI   s    (   R*   R+   R   R>   (    (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR<   C   s   	t   planes_cartesianc           B   s#   e  Z d  „  Z d „  Z d „  Z RS(   c   	      C   s  t  j j |  | ƒ t |  j ƒ  ƒ } g  |  _ xÆ | j D]» } |  j ƒ  j | j ƒ } |  j ƒ  j | j	 j
 ƒ  ƒ } t j t | | ƒ ƒ } t g  | D] } | | ^ q– ƒ } t | t | | ƒ ƒ } | j | ƒ d k  sã t ‚ |  j j | ƒ q8 W|  j ƒ  j ƒ  |  _ d  S(   Ng�íµ ÷Æ°>(   R   t   symmetryt   _copy_constructorR,   R-   R   t	   unit_cellt   orthogonalizeR   R   t	   as_doubleR   t   sqrtR   R
   R<   R>   R5   R7   t   build_derived_patterson_groupt   patterson_group(	   R   t   crystal_symmetryt   planes_ft   pft   n_ct   p_ct   len_n_cR   t   pl(    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR   N   s    	#c         C   s   t  |  j ƒ S(   N(   t   lenR   (   R   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   count\   s    c      	   C   sç   d  } xÚ |  j D]Ï } t | | ƒ } x¶ d D]® } x¥ d D]� } x” d D]Œ } | d | | d | | d | g } |  j ƒ  j | ƒ }	 xG |  j D]< }
 | d  k r· |
 j |	 ƒ } q“ t | |
 j |	 ƒ ƒ } q“ WqG Wq: Wq- Wq W| S(   Niÿÿÿÿi    i   i   (   iÿÿÿÿi    i   (   iÿÿÿÿi    i   (   iÿÿÿÿi    i   (   R   RG   R   RB   RC   R   R>   t   min(   R   R   R   R   R   t   u0t   u1t   u2t   xut   xucRN   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   min_distance_   s    ' ,(   R*   R+   R   RP   RW   (    (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyR?   L   s   		c         C   sQ   t  | j ƒ  ƒ } x8 | j D]- } | j G| j ƒ  G| j G| j G| j GHq Wd  S(   N(   R,   t   groupR   R   R)   R   R   R   (   t   flagst   space_group_infot   planest   plane(    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   test_call_backm   s    c          C   s+   d d l  m }  |  j t j d t ƒ d  S(   Niÿÿÿÿ(   t   debug_utilsi   (   t   cctbx.developmentR^   t   parse_options_loop_space_groupst   syst   argvR]   (   R^   (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   testr   s    t   __main__(   t
   __future__R    t   cctbxR   R   t   boostR   R   Ra   R   R   t   objectR   R,   R<   R@   R?   R]   Rc   R*   (    (    (    s@   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/sgtbx/harker.pyt   <module>   s   			!		