ó
R™xTc           @   s3   d  d l  m Z d e f d „  ƒ  YZ d „  Z d S(   iÿÿÿÿ(   t   divisiont   potential_objectc           B   s   e  Z d  „  Z d „  Z RS(   c         C   s(   | |  _  | |  _ d  |  _ d  |  _ d  S(   N(   t   f_obst   xray_structuret   Nonet   last_sites_movedt   f(   t   OR   R   (    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/omz/tardy_adaptor.pyt   __init__   s    			c         C   s  |  j  d  k s* |  j  j ƒ  | j ƒ  k r| |  _  |  j } t | ƒ | j ƒ  j ƒ  k s` t ‚ | j d | ƒ |  j	 j
 d | d d d t ƒ j ƒ  } d d l m } | j d t d	 d
 d |  j	 j ƒ  d d  d d  d | j ƒ  d d d d ƒ } | j ƒ  |  _ n  |  j S(   Nt
   sites_cartR   t	   algorithmt   directt   cos_sin_tableiÿÿÿÿ(   t   xrayt   compute_scale_using_all_datat   obs_typet   Ft   obst   weightst   r_free_flagst   f_calct   derivatives_depthi    t   scale_factor(   R   R   t   idR   t   lent
   scattererst   sizet   AssertionErrort   set_sites_cartR   t!   structure_factors_from_scattererst   FalseR   t   cctbxR   t   targets_least_squarest   Truet   datat   target_workR   (   R   t   sites_movedt   xsR   R   t   tg(    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/omz/tardy_adaptor.pyt   e_pot
   s(    		$		(   t   __name__t
   __module__R   R'   (    (    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/omz/tardy_adaptor.pyR      s   	c         C   sâ  | d  k r d GHd  S| } | j ƒ  j ƒ  d k r< d GHd  S| j ƒ  } | j ƒ  j ƒ  } | j d d ƒ } | j ƒ  }	 x^ | D]V \ }
 } |
 | k s� t ‚ |	 |
 j	 | ƒ } | d  k r d G| |
 G| | GHd  Sq Wd d  l
 } | j j j d | d	 | ƒ } d d  l } | j j d
 | d | d | j ƒ  d | d t | | ƒ d d ƒ } | j d k rid GHd  Sd G|  G| j ƒ  j ƒ  G| j ƒ  GH| j d | d d ƒ d Gt | j ƒ  ƒ GHd Gt | j ƒ  ƒ GH| j ƒ  } d G| j ƒ  GHd Gt | ƒ GH| j d k  r	d  S| j | j ƒ  k  s$t ‚ g  } d d l m } d d l m } xg | | j  | j! | j" ƒ D]J } | | d | | j <| j# d | ƒ | j$ ƒ  } | j% | | f ƒ qfWd d l& m' } | j( | d ƒ | j) ƒ  d  S(    Ns   NO_TARDY: no edge_listi    s   NO_TARDY: special positionst   distance_cutoffg      @s"   NO_TARDY: large distance for edge:iÿÿÿÿt   sitest	   edge_listt   labelst   massest
   tardy_treet   potential_objt*   near_singular_hinges_angular_tolerance_degi   i   s   NO_TARDY: multiple treess   Single tardy tree:t   vertex_labelst   prefixs     s   dof each joint:s   q_size each joint:s   q_packed.size():s	   q_packed:(   t   xsamples(   t   pii´   t   q_packed(   t   pyplots   r-(*   R   t   special_position_indicesR   R	   R   t   extract_labelst   pair_asu_tablet   extract_pair_sym_tableR   t   gett   scitbx.graph.tardy_treet   graphR/   t	   constructt   scitbx.rigid_bodyt
   rigid_bodyt   tardy_modelt   atomic_weightsR   t   number_of_treest   space_group_infot   show_summaryt   listt   degrees_of_freedom_each_jointt   q_size_each_jointt   pack_qt   numstrt   iqt   libtbx.utilsR4   t   mathR5   t   qmint   qmaxt   qstept   unpack_qR'   t   appendt   libtbxR7   t
   plot_pairst   show(   t   id_codeR   R   R,   t   paramsR%   R	   R-   t   patt   pstt   it   jt   sym_dictt   scitbxt   ttRB   R6   t   xyR4   R5   t   q_degR'   R7   (    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/omz/tardy_adaptor.pyt   sample_e_pot    sj    	"N(   t
   __future__R    t   objectR   Rb   (    (    (    sE   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/omz/tardy_adaptor.pyt   <module>   s   