ó
N™xTc           @   s	  d  d l  m Z d  d l m Z d  d l m Z d  d l m Z d  d l Z d  d l m Z d  d l	 m
 Z
 d  d l Z e j Z e j Z e j Z e j Z d e j j f d	 „  ƒ  YZ d
 e j j e f d „  ƒ  YZ d
 e j j e f d „  ƒ  YZ d d d „ Z d S(   iÿÿÿÿ(   t   division(   t   crystal(   t   sgtbx(   t   uctbxN(   t   flex(   t   minimum_covering_spheret   direct_space_asuc           B   s;   e  Z d  „  Z d d „ Z d d „ Z d d d d „ Z RS(   c         C   s2   t  j j j |  d | j d | j ƒ| |  _ d  S(   Nt   hall_symbolt   cuts(   R   R   t   __init__R   R   t	   unit_cell(   t   selft   asuR
   (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR	      s    c         C   sƒ   | d  k r d } n  t j ƒ  } |  j j } x@ |  j ƒ  D]2 } | j | g  | D] } t | ƒ ^ qP ƒ ƒ q: Wt d | d | ƒ S(   Ngü©ñÒMbP?t   pointst   epsilon(	   t   NoneR   t   vec3_doubleR
   t   orthogonalizet   shape_verticest   appendt   floatR   (   R   R   R   t   ortht   vertext   e(    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR      s     	0c         C   sM   | d  k r d } n  t d |  j d g  |  j D] } | j ƒ  ^ q. d | ƒ S(   Ng�íµ ÷Æ°>R
   R   t   is_inside_epsilon(   R   t	   float_asuR
   R   t   as_float_cut_plane(   R   R   t   cut(    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyt   as_float_asu   s    		"c         C   s"   |  j  d | ƒ j d | d | ƒ S(   NR   t	   thicknesst   relative_thickness(   R   t
   add_buffer(   R   R   R   R   (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR   &   s    N(   t   __name__t
   __module__R	   R   R   R   R   (    (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR      s
   	t   _c           B   s   e  Z d d d  „ Z RS(   c         C   sl   | | g j  d  ƒ d k s! t ‚ | d  k r6 d } n  | d  k r_ |  j ƒ  j ƒ  d | } n  |  j | ƒ S(   Ni    g�íµ ÷Æ°>i   g      @gUUUUUUÕ?(   t   countR   t   AssertionErrorR
   t   volumet   _add_buffer(   R   R   R   (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR   .   s    !	N(   R    R!   R   R   (    (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR"   ,   s   c           B   s   e  Z d  „  Z RS(   c         C   s%   |  j  | ƒ j ƒ  j |  j | ƒ ƒ S(   N(   t   get_rt_mx_it   inverset   multiplyt   get_rt_mx_j(   R   t   pair(    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyt   get_rt_mx_ji8   s    (   R    R!   R,   (    (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyR"   6   s   g      à?i    c      	   C   s�  |  j  ƒ  } |  j ƒ  } t j d | d | d | d | ƒ } t j d | d | d | ƒ } | j ƒ  j | ƒ } | j ƒ  j | ƒ } g  d d d g | d f d d d g | d f d d d g | d f d d d g | d f d d d g | d f d d d g | d f g D]! \ } } t d	 | d
 | ƒ ^ q}	 t	 d | j
 ƒ  d t d | j ƒ  d |	 ƒ j d | ƒ d d ƒ }
 |
 j d |  ƒ |
 S(   Nt   sites_cart_mint   sites_cart_maxt   default_buffer_layert   min_unit_cell_lengthi   i    iÿÿÿÿi   t   nt   ct   space_groupR   R
   R   R   t   buffer_thicknesst   original_sites(   t   mint   maxR   t   non_crystallographic_symmetryR   t!   non_crystallographic_buffer_layerR
   t   fractionalizet   float_cut_planet   asu_mappingsR3   R   R   t   process_sites_cart(   t
   sites_cartR/   R0   t	   sites_mint	   sites_maxt   crystal_symmetryt   buffer_layerR1   R2   t   asu_cutst   result(    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyt!   non_crystallographic_asu_mappings;   s8    				A	(   t
   __future__R    t   cctbxR   R   R   t   cctbx.sgtbx.direct_space_asut   cctbx.array_familyR   t   scitbx.mathR   t   boost.pythont   boostt    direct_space_asu_float_cut_planeR;   t   direct_space_asu_float_asuR   t   direct_space_asu_asu_mappingt   asu_mappingt   direct_space_asu_asu_mappingsR<   R   t   pythont   injectorR"   RE   (    (    (    sL   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/direct_space_asu.pyt   <module>   s    				
