ó
N™xTc           @   s¨   d  d l  m Z d  d l m Z d  d l m Z d  d l m Z e j Z e j	 Z
 e j Z e j Z d e f d „  ƒ  YZ d „  Z d d	 „ Z d
 „  Z d d „ Z d S(   iÿÿÿÿ(   t   division(   t   crystal(   t   sgtbx(   t   flext   nodec           B   s   e  Z d  „  Z RS(   c         C   s7   | |  _  | |  _ t | j | j | ƒ ƒ ƒ |  _ d  S(   N(   t   i_seqt   rt_mxt   strt   multiplyt
   special_opt   rt_mx_unique(   t   selft   asu_mappingsR   R   (    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyt   __init__   s    		(   t   __name__t
   __module__R   (    (    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyR      s   c         C   s=   x6 | D]. } | j  |  j  k r | j |  j k r t Sq Wt S(   N(   R   R
   t   Truet   False(   t	   test_nodet	   node_listt	   list_node(    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyt	   find_node   s
    i
   c         C   s  |  j  ƒ  } g  } x÷t |  j ƒ  ƒ D]ã\ } } | j d | d d ƒ } | j ƒ  d k rn | j g  ƒ q% n  g  } t d | d | d t j ƒ  ƒ g } d g }	 xWt	 | ƒ D]I}
 | } | } g  } x| D]} | j d | j
 d d ƒ } | j j | j ƒ  ƒ } x× |  j ƒ  | j
 j ƒ  D]¼ \ } } x­ | D]¥ } xœ | D]” } | j d | d | ƒ } t d | d | d | j | ƒ ƒ } t d | d | ƒ r@t d | d | ƒ r@t d | d | ƒ r@| j | ƒ q@q@Wq3Wq WqÍ W|	 j t | ƒ ƒ q® W| j |	 ƒ q% W| S(	   NR   t   i_symi    R   R   i   R   R   (   R   t	   enumeratet   tablet	   get_rt_mxt   sizet   appendR   R   R   t   xrangeR   R   t   inverset   itemsR   t   len(   t   pair_asu_tablet	   max_shellR   t
   term_tablet   i_seq_pivott   pair_asu_dict_pivott   rt_mx_pivott   nodes_middlet
   nodes_nextt   termst   i_shell_minus_1t
   nodes_prevt   node_mt   rt_mx_it   rt_mx_nit   j_seqt   j_sym_groupst   j_sym_groupt   j_symt   rt_mx_jt   new_node(    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyt   simple_and_slow   sF    	& c         C   ss   i  } xf t  |  ƒ D]X } | j ƒ  } | d } g  | d D] } t | ƒ ^ q: } | j | g  ƒ j | ƒ q W| S(   Ni    i   (   t   opent   splitt   intt
   setdefaultR   (   t	   file_namet   resultt   linet   fldst   tagt   fR(   (    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyt   get_kriber_coseq_file>   s    
#c         C   s¥  t  | ƒ |  j ƒ  j ƒ  k s$ t ‚ xß t |  j ƒ  | ƒ D]È \ } } | j Gt | ƒ G| d  k	 rt | d ƒ } t } | j	 ƒ  } | j
 ƒ  x_ | D]W } xN | | D]B }	 t t  |	 ƒ t  | ƒ ƒ }
 |	 |
  | |
  k r§ | Gt } q§ q§ Wq– W| sd Gqn  Hq: Wt j ƒ  } t j ƒ  } x[ t |  j ƒ  | ƒ D]D \ } } | j t j t j t | ƒ ƒ ƒ ƒ | j | j ƒ  ƒ q4Wd t  | ƒ d t j | | ƒ f GHd  S(   Ni   t   Unknowns
   TD%d: %.2f(   R   t
   scatterersR   t   AssertionErrort   zipt   labelt   listt   NoneR   t   keyst   sortt   minR   R   t   doubleR   t   sumt   size_tt   multiplicityt   mean_weighted(   t	   structureR"   t
   coseq_dictt	   scattererR(   t   terms_to_matcht
   have_matcht   tagsR=   t   coseq_termst   nt
   sums_termst   multiplicities(    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyt
   show_termsG   s0    $"

"%N(   t
   __future__R    t   cctbxR   R   t   cctbx.array_familyR   t   coordination_sequences_simplet   simplet!   coordination_sequences_simple_symt
   simple_symt'   coordination_sequences_shell_asu_tablest   shell_asu_tablest'   coordination_sequences_shell_sym_tablest   shell_sym_tablest   objectR   R   R4   R?   RF   RY   (    (    (    sR   /public2/ftp/pub/ccp4/6.5/ccp4-6.5/lib/py2/cctbx/crystal/coordination_sequences.pyt   <module>   s   					%		