| phaser_io::ACCE | |
| scala::all_controls | |
| phaser_io::ALLOW | |
| CCtbxSym::AlternativeBases | |
| scala::AnalysisControls | |
| scala::Array3D< T > | |
| phaser_io::ASSU | |
| scala::Batch | Batch object |
| scala::BatchNumber | A batch number and its original version (before offset, if any) |
| scala::BatchSelection | A selection of batches, ie a collection of batch ranges & a batch list |
| scala::BfactorModel | |
| scala::BinSums | |
| phaser_io::BLANK | |
| Brukerp4p | |
| phaser_io::CCP4base | |
| phaser_io::CELL | |
| CCtbxSym::CellGroup | |
| phaser_io::CENT | |
| phaser_io::CHIRAL | |
| phaser_io::CHOOSE | |
| scala::ChooseSolution | |
| MtzIO::ClipperLabelPair | |
| scala::col_controls | |
| MtzIO::column_labels | |
| MtzIO::column_select | |
| MtzIO::ColumnData | |
| MtzIO::ColumnNumberLabel | |
| phaser_io::COPY | |
| scala::correl_coeff | |
| scala::CrystalType | Crystal system + lattice centring |
| scala::data_flags | Data column flags to indicate which columns are present in the file |
| scala::DatasetControl | |
| scala::DM_1minusmCu | |
| scala::DM_1minusmSq | |
| scala::DM_2sqrt | |
| scala::DM_cubic | |
| scala::DM_cubicsu | |
| scala::DM_lin | |
| EProb | |
| phaser_io::error | |
| scala::Euler< T > | Euler angle class |
| scala::Euler_ccp4 | Euler_ccp4 angle class |
| scala::Euler_explicit | Euler_explicit angle class |
| phaser_io::EXCLUDE | |
| scala::ExpandFileName | |
| scala::file_select | Various things to control general selection from file |
| FileNameTime | |
| scala::FileRead | Status of a file, was it read succesfully etc? |
| FormatOutput | Format output in a similar way to the phaser Output class, but just return as a string |
| scala::GlobalControls | |
| hash_table | |
| scala::Hkl | Reflection 'Miller' index |
| scala::hkl_merged_list | |
| scala::hkl_symmetry | All required reciprocal-space symmetry stuff |
| scala::hkl_unmerge_list | This is the top-level unmerged reflection object |
| phaser_io::HKLIN | |
| scala::HKLIN_data | |
| phaser_io::HKLOUT | |
| phaser_io::HKLREF | |
| scala::HKLTest | |
| scala::IceRing | |
| scala::IKode | |
| scala::IndexIsigI | |
| phaser_io::InputAll | |
| phaser_io::InputBase | |
| phaser_io::InputError | |
| scala::IntensityStatistics | |
| phaser_io::InterpretCommandLine | |
| phaser_io::InterpretCommandLineOC | |
| scala::IntgrtProb | |
| scala::IntRange | |
| scala::IO_files | |
| phaser_io::ISIG | |
| scala::IsigI | I, sigI pair, based on clipper::datatypes::I_sigI but with some differences |
| scala::IsigNorm | |
| scala::IsPair | |
| XDSIO::KeyValues | |
| phaser_io::LABI | |
| phaser_io::LABR | |
| CCtbxSym::LatticeGroup | |
| CCtbxSym::LatticeSymmetry | |
| phaser_io::LAUE | |
| scala::LinearFit | |
| scala::LinearLSQ | |
| scala::MakeHKL_listscompatible | |
| scala::MeanModelBase | |
| scala::MeanSD | |
| scala::MeanValue | |
| phaser_io::MERGED | |
| scala::MetricTensor | Metric tensor (from Clipper with extensions) |
| MGvector | |
| scala::MSdiff | |
| MtzIO::MtzMrgFile | |
| MtzIO::MtzUnmrgFile | Class to handle reading unmerged MTZ files: this class does not write MTZ files |
| phaser_io::MULTIPLY | |
| phaser_io::NAME | |
| phaser_io::NEIGHBOUR | |
| phaser_io::NOASSU | |
| scala::Normalise | |
| phaser_io::NOTEST | |
| Numberfield | Information for formatting a number field |
| scala::observation | An observation of a reflection, which may consist of one or more parts |
| scala::observation_part | An observation of an intensity: may be a partial |
| scala::ObservationFlag | |
| scala::ObservationFlagControl | |
| scala::ObservationStatus | |
| scala::ObservationStatusSet | |
| scala::OneDFourier | |
| phaser_io::ORIG | |
| scala::OutlierControl | |
| phaser_io::OUTPUT | |
| phaser_io::Output | |
| scala::PairSet | |
| scala::partial_controls | |
| phaser_io::PARTIALS | |
| scala::PGcompareOrder | |
| scala::PGscore | |
| CCtbxSym::PointGroup | |
| PointlessStatus | |
| scala::Polar_ccp4 | Polar_ccp4 angle class |
| scala::PossibleSpaceGroup | |
| phaser_io::Preprocessor | |
| phaser_io::PreprocessorError | |
| scala::PxdName | Project name / Crystal name / Dataset name |
| scala::Range | |
| scala::RefineControl | Controls on scale refinement |
| scala::reflection | A unique reflection, containing a list of observations |
| ReflectionFileType | Class to automatically determine the file type of a reflection file |
| phaser_io::REIN | |
| scala::ReindexOp | Reindex operator H (plus optional translation, usually 0,0,0) |
| scala::ReindexScore | |
| scala::RejectFlags | |
| phaser_io::RESO | |
| scala::ResoRange | |
| scala::Rfactor | |
| scala::Rings | |
| scala::Rotation | Rotation class |
| scala::Run | |
| scala::run_controls | |
| scala::RunRange | |
| SaintRun | |
| SCAIO::SaintRun | |
| phaser_io::SCAIN | |
| scala::scale_model | |
| SCAIO::SCAunmergeFile | Class to read files in Scalepack, Shelx or Saint formats into unmerged object |
| scala::Scell | Unit cell class |
| phaser_io::SCORE | |
| scala::ScoreAccept | |
| scala::SCsignificance | |
| scala::SDcorrection | |
| scala::SelectI | |
| scala::SetScores | |
| phaser_io::SETTING | |
| scala::Solution | |
| phaser_io::SPAC | |
| scala::SpaceGroup | Mostly same as (and derived from) clipper::Spacegroup |
| scala::Spline | |
| StringUtil | |
| scala::SymElement | |
| phaser_io::SyntaxError | |
| phaser_io::SYSA | |
| phaser_io::SYSABS | |
| scala::SysAbsScore | |
| phaser_io::TEST | |
| Timer | |
| phaser_io::TOLE | |
| scala::UnitCellSet | |
| scala::ValCount | |
| scala::ValidElementObserved | |
| phaser_io::WAVELENGTH | |
| phaser_io::WriteError | |
| scala::Xdataset | Crystal/Dataset object |
| phaser_io::XDSIN | |
| XDSIO::XDSunmergeFile | |
| phaser_io::XMLOUT | |
| phaser_io::XYZIN | |
| scala::Zone | |
1.6.3
