JLigand

Version 1.0.25 (30 Aug 2011)

Downloads

• jligand.jar: an "executable" for apparently any platform with Java 5 or higher installed
• JLigand.1.0.25.tar.gz: source code and makefile

Installation and launching

Prerequisites

• CCP4-6.1.13 (may also work with 6.1.2 and 6.1.3)
• Coot-0.6.1 (is required for the tutorials below)
Both packages can be downloaded form CCP4 downloads

Windows

• Download jligand.jar
• Launch JLigand by double clicking the jligand.jar icon

Linux and Mac OS X

• Download jligand.jar into a directory <Directory>
• tcsh: Append the following line to ~/.tcshrc or ~/.cshrc
  alias jligand java -jar <Directory>/jligand.jar
  bash: Append the following line to ~/.bashrc
  alias jligand="java -jar <Directory>/jligand.jar"
• Open a new terminal window and launch JLigand by typing jligand in the command line

Tutorials

• A new ligand (JLigand, Refmac, Coot)
• A new link and composite ligand (JLigand, Refmac, Coot)
• Metal-containing ligand (JLigand)
  NB. The last tutorial requires new versions of libcheck, refmac5 and monomer library.
  All these can be downloaded from here (executables of both libcheck and refmac5
  are in refmac5.6_linux.tar.gz and refmac5.6_macintel.tar.gz)